Summary
Globals
Reference size | 3,095,693,983 |
Number of reads | 29,662,078 |
Mapped reads | 26,028,966 / 87.75% |
Unmapped reads | 3,633,112 / 12.25% |
Paired reads | 0 / 0% |
Read min/max/mean length | 90 / 90 / 90 |
Clipped reads | 98 / 0% |
Duplication rate | 6.99% |
ACGT Content
Number/percentage of A's | 671,162,864 / 28.65% |
Number/percentage of C's | 499,320,121 / 21.32% |
Number/percentage of T's | 672,190,716 / 28.7% |
Number/percentage of G's | 499,745,298 / 21.33% |
Number/percentage of N's | 0 / 0% |
GC Percentage | 42.65% |
Coverage
Mean | 0.76 |
Standard Deviation | 4.5 |
Mapping Quality
Mean Mapping Quality | 32.21 |
Indels
Total reads with indels | 321,242 |
Insertions | 91,285 |
Deletions | 229,957 |
Homopolymer indels | 73.48% |
Chromosome stats
Name | Length | Mapped bases | Mean coverage | Standard deviation |
chr1 | 249250621 | 226379310 | 0.91 | 10.16 |
chr2 | 243199373 | 182726479 | 0.75 | 1.56 |
chr3 | 198022430 | 144317023 | 0.73 | 2.34 |
chr4 | 191154276 | 136520794 | 0.71 | 1.22 |
chr5 | 180915260 | 132922157 | 0.73 | 0.68 |
chr6 | 171115067 | 137315855 | 0.8 | 2.31 |
chr7 | 159138663 | 121446114 | 0.76 | 8.57 |
chr8 | 146364022 | 118014904 | 0.81 | 1.53 |
chr9 | 141213431 | 92212577 | 0.65 | 0.76 |
chr10 | 135534747 | 104711120 | 0.77 | 11.06 |
chr11 | 135006516 | 103426802 | 0.77 | 0.64 |
chr12 | 133851895 | 100604329 | 0.75 | 0.66 |
chr13 | 115169878 | 73893415 | 0.64 | 0.77 |
chr14 | 107349540 | 100317514 | 0.93 | 1.06 |
chr15 | 102531392 | 64990048 | 0.63 | 0.77 |
chr16 | 90354753 | 71300866 | 0.79 | 3.92 |
chr17 | 81195210 | 67798305 | 0.84 | 1.14 |
chr18 | 78077248 | 37674687 | 0.48 | 1.66 |
chr19 | 59128983 | 71826029 | 1.21 | 3.39 |
chr20 | 63025520 | 73892140 | 1.17 | 1.27 |
chr21 | 48129895 | 29721101 | 0.62 | 1.62 |
chr22 | 51304566 | 30882032 | 0.6 | 0.8 |
chrX | 155270560 | 114097924 | 0.73 | 1.86 |
chrY | 59373566 | 3832416 | 0.06 | � |
chrM | 16571 | 1936190 | 116.84 | 31.86 |