Summary
Globals
Reference size | 3,095,693,983 |
Number of reads | 41,325,641 |
Mapped reads | 36,036,351 / 87.2% |
Unmapped reads | 5,289,290 / 12.8% |
Paired reads | 0 / 0% |
Read min/max/mean length | 100 / 100 / 100 |
Clipped reads | 155 / 0% |
Duplication rate | 3.47% |
ACGT Content
Number/percentage of A's | 1,026,958,581 / 28.5% |
Number/percentage of C's | 773,886,462 / 21.48% |
Number/percentage of T's | 1,028,652,097 / 28.55% |
Number/percentage of G's | 773,786,635 / 21.47% |
Number/percentage of N's | 0 / 0% |
GC Percentage | 42.95% |
Coverage
Mean | 1.16 |
Standard Deviation | 6.17 |
Mapping Quality
Mean Mapping Quality | 32.38 |
Indels
Total reads with indels | 661,821 |
Insertions | 165,080 |
Deletions | 496,741 |
Homopolymer indels | 70.63% |
Chromosome stats
Name | Length | Mapped bases | Mean coverage | Standard deviation |
chr1 | 249250621 | 346530284 | 1.39 | 14.04 |
chr2 | 243199373 | 278591236 | 1.15 | 2.17 |
chr3 | 198022430 | 222341262 | 1.12 | 2.6 |
chr4 | 191154276 | 202537705 | 1.06 | 1.37 |
chr5 | 180915260 | 202370160 | 1.12 | 0.87 |
chr6 | 171115067 | 208209595 | 1.22 | 3.39 |
chr7 | 159138663 | 185262443 | 1.16 | 14.2 |
chr8 | 146364022 | 175739846 | 1.2 | 2.36 |
chr9 | 141213431 | 141210167 | 1 | 1 |
chr10 | 135534747 | 159940307 | 1.18 | 12.47 |
chr11 | 135006516 | 157272638 | 1.16 | 1.28 |
chr12 | 133851895 | 156789929 | 1.17 | 0.79 |
chr13 | 115169878 | 120932558 | 1.05 | 0.95 |
chr14 | 107349540 | 156667434 | 1.46 | 1.37 |
chr15 | 102531392 | 101733186 | 0.99 | 1.01 |
chr16 | 90354753 | 111044941 | 1.23 | 5.52 |
chr17 | 81195210 | 105006785 | 1.29 | 1.15 |
chr18 | 78077248 | 57380224 | 0.73 | 1.21 |
chr19 | 59128983 | 113252371 | 1.92 | 3.05 |
chr20 | 63025520 | 114811596 | 1.82 | 1.3 |
chr21 | 48129895 | 44891153 | 0.93 | 1.77 |
chr22 | 51304566 | 47237895 | 0.92 | 1.07 |
chrX | 155270560 | 184349486 | 1.19 | 2.93 |
chrY | 59373566 | 4512493 | 0.08 | � |
chrM | 16571 | 5382471 | 324.81 | 80.54 |