Summary
Globals
Reference size | 3,095,693,983 |
Number of reads | 32,802,597 |
Mapped reads | 26,736,362 / 81.51% |
Unmapped reads | 6,066,235 / 18.49% |
Paired reads | 0 / 0% |
Read min/max/mean length | 90 / 90 / 90 |
Clipped reads | 101 / 0% |
Duplication rate | 10.69% |
ACGT Content
Number/percentage of A's | 692,456,852 / 28.78% |
Number/percentage of C's | 509,883,572 / 21.19% |
Number/percentage of T's | 693,656,993 / 28.83% |
Number/percentage of G's | 510,090,697 / 21.2% |
Number/percentage of N's | 0 / 0% |
GC Percentage | 42.39% |
Coverage
Mean | 0.78 |
Standard Deviation | 4.46 |
Mapping Quality
Mean Mapping Quality | 32.01 |
Indels
Total reads with indels | 355,986 |
Insertions | 97,720 |
Deletions | 258,266 |
Homopolymer indels | 73.33% |
Chromosome stats
Name | Length | Mapped bases | Mean coverage | Standard deviation |
chr1 | 249250621 | 229140623 | 0.92 | 10.64 |
chr2 | 243199373 | 186589893 | 0.77 | 1.55 |
chr3 | 198022430 | 147997133 | 0.75 | 2.11 |
chr4 | 191154276 | 139509772 | 0.73 | 1.57 |
chr5 | 180915260 | 134413345 | 0.74 | 0.67 |
chr6 | 171115067 | 140330800 | 0.82 | 2.31 |
chr7 | 159138663 | 124582689 | 0.78 | 8.45 |
chr8 | 146364022 | 107703484 | 0.74 | 1.57 |
chr9 | 141213431 | 95120469 | 0.67 | 0.74 |
chr10 | 135534747 | 109159267 | 0.81 | 9.76 |
chr11 | 135006516 | 106895680 | 0.79 | 1.17 |
chr12 | 133851895 | 103473700 | 0.77 | 0.63 |
chr13 | 115169878 | 93549434 | 0.81 | 0.58 |
chr14 | 107349540 | 103266086 | 0.96 | 1.04 |
chr15 | 102531392 | 66969477 | 0.65 | 0.76 |
chr16 | 90354753 | 71710852 | 0.79 | 3.66 |
chr17 | 81195210 | 69676106 | 0.86 | 1.12 |
chr18 | 78077248 | 39488532 | 0.51 | 2.18 |
chr19 | 59128983 | 72535140 | 1.23 | 3.39 |
chr20 | 63025520 | 76840915 | 1.22 | 1.23 |
chr21 | 48129895 | 31437490 | 0.65 | 1.89 |
chr22 | 51304566 | 30969153 | 0.6 | 0.8 |
chrX | 155270560 | 117120953 | 0.75 | 1.85 |
chrY | 59373566 | 4772293 | 0.08 | 1 |
chrM | 16571 | 3195484 | 192.84 | 48.43 |