Summary
Globals
Reference size | 3,095,693,983 |
Number of reads | 34,450,248 |
Mapped reads | 30,439,962 / 88.36% |
Unmapped reads | 4,010,286 / 11.64% |
Paired reads | 0 / 0% |
Read min/max/mean length | 90 / 90 / 90 |
Clipped reads | 118 / 0% |
Duplication rate | 5.05% |
ACGT Content
Number/percentage of A's | 791,348,384 / 28.89% |
Number/percentage of C's | 577,609,550 / 21.09% |
Number/percentage of T's | 792,520,159 / 28.93% |
Number/percentage of G's | 577,934,294 / 21.1% |
Number/percentage of N's | 0 / 0% |
GC Percentage | 42.18% |
Coverage
Mean | 0.89 |
Standard Deviation | 5.51 |
Mapping Quality
Mean Mapping Quality | 32.26 |
Indels
Total reads with indels | 416,808 |
Insertions | 115,597 |
Deletions | 301,211 |
Homopolymer indels | 73.66% |
Chromosome stats
Name | Length | Mapped bases | Mean coverage | Standard deviation |
chr1 | 249250621 | 262830617 | 1.05 | 13.22 |
chr2 | 243199373 | 212363110 | 0.87 | 1.8 |
chr3 | 198022430 | 168581944 | 0.85 | 2.7 |
chr4 | 191154276 | 159530904 | 0.83 | 1.14 |
chr5 | 180915260 | 155067121 | 0.86 | 1.12 |
chr6 | 171115067 | 160253260 | 0.94 | 2.67 |
chr7 | 159138663 | 141075087 | 0.89 | 10.31 |
chr8 | 146364022 | 136347002 | 0.93 | 1.77 |
chr9 | 141213431 | 107404773 | 0.76 | 0.65 |
chr10 | 135534747 | 122234316 | 0.9 | 12.58 |
chr11 | 135006516 | 118771310 | 0.88 | 1.11 |
chr12 | 133851895 | 117781020 | 0.88 | 1.11 |
chr13 | 115169878 | 87951507 | 0.76 | 0.65 |
chr14 | 107349540 | 119487510 | 1.11 | 0.87 |
chr15 | 102531392 | 76727666 | 0.75 | 0.66 |
chr16 | 90354753 | 82654523 | 0.91 | 4.49 |
chr17 | 81195210 | 77889544 | 0.96 | 1.04 |
chr18 | 78077248 | 46283429 | 0.59 | 2.16 |
chr19 | 59128983 | 84595503 | 1.43 | 4.24 |
chr20 | 63025520 | 86356513 | 1.37 | 1.06 |
chr21 | 48129895 | 36109540 | 0.75 | 1.85 |
chr22 | 51304566 | 35824678 | 0.7 | 0.72 |
chrX | 155270560 | 135367692 | 0.87 | 2.29 |
chrY | 59373566 | 4746091 | 0.08 | 1 |
chrM | 16571 | 3567203 | 215.27 | 52.39 |