Summary
Globals
Reference size | 3,095,693,983 |
Number of reads | 30,554,870 |
Mapped reads | 26,597,785 / 87.05% |
Unmapped reads | 3,957,085 / 12.95% |
Paired reads | 0 / 0% |
Read min/max/mean length | 100 / 100 / 100 |
Clipped reads | 120 / 0% |
Duplication rate | 11.47% |
ACGT Content
Number/percentage of A's | 758,030,990 / 28.5% |
Number/percentage of C's | 570,698,935 / 21.46% |
Number/percentage of T's | 759,502,271 / 28.56% |
Number/percentage of G's | 571,284,184 / 21.48% |
Number/percentage of N's | 0 / 0% |
GC Percentage | 42.94% |
Coverage
Mean | 0.86 |
Standard Deviation | 4.23 |
Mapping Quality
Mean Mapping Quality | 32.26 |
Indels
Total reads with indels | 533,198 |
Insertions | 124,931 |
Deletions | 408,267 |
Homopolymer indels | 69.03% |
Chromosome stats
Name | Length | Mapped bases | Mean coverage | Standard deviation |
chr1 | 249250621 | 251715580 | 1.01 | 9.11 |
chr2 | 243199373 | 203032624 | 0.83 | 1.52 |
chr3 | 198022430 | 160617960 | 0.81 | 1.83 |
chr4 | 191154276 | 153785593 | 0.8 | 1.53 |
chr5 | 180915260 | 148913667 | 0.82 | 1.15 |
chr6 | 171115067 | 153703941 | 0.9 | 2.49 |
chr7 | 159138663 | 136902887 | 0.86 | 9.66 |
chr8 | 146364022 | 129519534 | 0.88 | 1.79 |
chr9 | 141213431 | 104201074 | 0.74 | 0.67 |
chr10 | 135534747 | 116971775 | 0.86 | 8.85 |
chr11 | 135006516 | 117843387 | 0.87 | 1.11 |
chr12 | 133851895 | 114360048 | 0.85 | 1.13 |
chr13 | 115169878 | 88451861 | 0.77 | 0.64 |
chr14 | 107349540 | 113893706 | 1.06 | 1.37 |
chr15 | 102531392 | 74019314 | 0.72 | 0.69 |
chr16 | 90354753 | 82393440 | 0.91 | 4.02 |
chr17 | 81195210 | 78417060 | 0.97 | 1.03 |
chr18 | 78077248 | 43613454 | 0.56 | 1.92 |
chr19 | 59128983 | 83955303 | 1.42 | 2.45 |
chr20 | 63025520 | 87382338 | 1.39 | 1.44 |
chr21 | 48129895 | 36029747 | 0.75 | 2.11 |
chr22 | 51304566 | 35442699 | 0.69 | 0.72 |
chrX | 155270560 | 138893607 | 0.89 | 2.05 |
chrY | 59373566 | 5452683 | 0.09 | � |
chrM | 16571 | 575263 | 34.72 | 9.79 |