Summary
Globals
Reference size | 3,095,693,983 |
Number of reads | 46,427,947 |
Mapped reads | 42,327,610 / 91.17% |
Unmapped reads | 4,100,337 / 8.83% |
Paired reads | 0 / 0% |
Read min/max/mean length | 94 / 94 / 94 |
Clipped reads | 209 / 0% |
Duplication rate | 29% |
ACGT Content
Number/percentage of A's | 1,009,859,218 / 25.38% |
Number/percentage of C's | 978,247,386 / 24.59% |
Number/percentage of T's | 1,011,943,039 / 25.43% |
Number/percentage of G's | 978,532,820 / 24.6% |
Number/percentage of N's | 0 / 0% |
GC Percentage | 49.18% |
Coverage
Mean | 1.29 |
Standard Deviation | 3.78 |
Mapping Quality
Mean Mapping Quality | 32.26 |
Indels
Total reads with indels | 690,558 |
Insertions | 170,299 |
Deletions | 520,259 |
Homopolymer indels | 69.69% |
Chromosome stats
Name | Length | Mapped bases | Mean coverage | Standard deviation |
chr1 | 249250621 | 393392446 | 1.58 | 6.89 |
chr2 | 243199373 | 287610330 | 1.18 | 2.15 |
chr3 | 198022430 | 210402452 | 1.06 | 1.69 |
chr4 | 191154276 | 181005597 | 0.95 | 3.48 |
chr5 | 180915260 | 198957427 | 1.1 | 1.95 |
chr6 | 171115067 | 210305214 | 1.23 | 3.08 |
chr7 | 159138663 | 201867886 | 1.27 | 8.15 |
chr8 | 146364022 | 170750254 | 1.17 | 2.15 |
chr9 | 141213431 | 158646268 | 1.12 | 1.93 |
chr10 | 135534747 | 179656606 | 1.33 | 2.69 |
chr11 | 135006516 | 181593775 | 1.35 | 2.28 |
chr12 | 133851895 | 171156378 | 1.28 | 2.32 |
chr13 | 115169878 | 105290436 | 0.91 | 1.78 |
chr14 | 107349540 | 168220466 | 1.57 | 2.56 |
chr15 | 102531392 | 118640142 | 1.16 | 1.91 |
chr16 | 90354753 | 150615290 | 1.67 | 2.69 |
chr17 | 81195210 | 163195810 | 2.01 | 2.82 |
chr18 | 78077248 | 62286034 | 0.8 | 4.51 |
chr19 | 59128983 | 189384063 | 3.2 | 3.84 |
chr20 | 63025520 | 157581813 | 2.5 | 3.28 |
chr21 | 48129895 | 53823635 | 1.12 | 5.27 |
chr22 | 51304566 | 79343821 | 1.55 | 2.37 |
chrX | 155270560 | 173684265 | 1.12 | 3.43 |
chrY | 59373566 | 10421518 | 0.18 | 1.72 |
chrM | 16571 | 1351962 | 81.59 | 39.07 |