Summary
Globals
Reference size | 3,095,693,983 |
Number of reads | 44,734,052 |
Mapped reads | 40,854,811 / 91.33% |
Unmapped reads | 3,879,241 / 8.67% |
Paired reads | 0 / 0% |
Read min/max/mean length | 94 / 94 / 94 |
Clipped reads | 255 / 0% |
Duplication rate | 43.96% |
ACGT Content
Number/percentage of A's | 988,579,053 / 25.74% |
Number/percentage of C's | 930,499,372 / 24.23% |
Number/percentage of T's | 990,366,535 / 25.79% |
Number/percentage of G's | 930,702,621 / 24.24% |
Number/percentage of N's | 0 / 0% |
GC Percentage | 48.47% |
Coverage
Mean | 1.24 |
Standard Deviation | 4 |
Mapping Quality
Mean Mapping Quality | 32.27 |
Indels
Total reads with indels | 682,503 |
Insertions | 163,252 |
Deletions | 519,251 |
Homopolymer indels | 69.59% |
Chromosome stats
Name | Length | Mapped bases | Mean coverage | Standard deviation |
chr1 | 249250621 | 386269401 | 1.55 | 8.16 |
chr2 | 243199373 | 280360278 | 1.15 | 2.16 |
chr3 | 198022430 | 209013322 | 1.06 | 1.7 |
chr4 | 191154276 | 167507714 | 0.88 | 2.29 |
chr5 | 180915260 | 190442240 | 1.05 | 1.97 |
chr6 | 171115067 | 200894923 | 1.17 | 3.1 |
chr7 | 159138663 | 192894026 | 1.21 | 9.36 |
chr8 | 146364022 | 162694102 | 1.11 | 2.4 |
chr9 | 141213431 | 153115750 | 1.08 | 1.96 |
chr10 | 135534747 | 173726127 | 1.28 | 3.37 |
chr11 | 135006516 | 173107830 | 1.28 | 2.09 |
chr12 | 133851895 | 165346354 | 1.24 | 2.12 |
chr13 | 115169878 | 102613662 | 0.89 | 1.79 |
chr14 | 107349540 | 166175243 | 1.55 | 2.57 |
chr15 | 102531392 | 117881757 | 1.15 | 1.92 |
chr16 | 90354753 | 147082090 | 1.63 | 2.71 |
chr17 | 81195210 | 156126890 | 1.92 | 2.7 |
chr18 | 78077248 | 58385048 | 0.75 | 2.91 |
chr19 | 59128983 | 186689428 | 3.16 | 4 |
chr20 | 63025520 | 149262343 | 2.37 | 2.9 |
chr21 | 48129895 | 49505806 | 1.03 | 3.46 |
chr22 | 51304566 | 78052672 | 1.52 | 2.38 |
chrX | 155270560 | 163971659 | 1.06 | 3.45 |
chrY | 59373566 | 6907576 | 0.12 | 0.99 |
chrM | 16571 | 2720905 | 164.2 | 68.03 |