Summary
Globals
| Reference size | 3,095,693,983 |
| Number of reads | 37,456,074 |
| Mapped reads | 32,680,690 / 87.25% |
| Unmapped reads | 4,775,384 / 12.75% |
| Paired reads | 0 / 0% |
| Read min/max/mean length | 100 / 100 / 100 |
| Clipped reads | 120 / 0% |
| Duplication rate | 2.8% |
ACGT Content
| Number/percentage of A's | 937,767,364 / 28.7% |
| Number/percentage of C's | 695,166,743 / 21.27% |
| Number/percentage of T's | 939,517,357 / 28.75% |
| Number/percentage of G's | 695,298,381 / 21.28% |
| Number/percentage of N's | 0 / 0% |
| GC Percentage | 42.55% |
Coverage
| Mean | 1.06 |
| Standard Deviation | 5.25 |
Mapping Quality
| Mean Mapping Quality | 32.39 |
Indels
| Total reads with indels | 600,292 |
| Insertions | 150,206 |
| Deletions | 450,086 |
| Homopolymer indels | 70.92% |
Chromosome stats
| Name | Length | Mapped bases | Mean coverage | Standard deviation |
| chr1 | 249250621 | 314904156 | 1.26 | 11.81 |
| chr2 | 243199373 | 253784638 | 1.04 | 1.98 |
| chr3 | 198022430 | 202790428 | 1.02 | 2.23 |
| chr4 | 191154276 | 185689268 | 0.97 | 1.03 |
| chr5 | 180915260 | 184169883 | 1.02 | 0.98 |
| chr6 | 171115067 | 190137471 | 1.11 | 2.96 |
| chr7 | 159138663 | 167974785 | 1.06 | 12.08 |
| chr8 | 146364022 | 160253177 | 1.09 | 1.95 |
| chr9 | 141213431 | 127897157 | 0.91 | 1.09 |
| chr10 | 135534747 | 144636249 | 1.07 | 10.72 |
| chr11 | 135006516 | 142989524 | 1.06 | 0.94 |
| chr12 | 133851895 | 142547994 | 1.06 | 0.93 |
| chr13 | 115169878 | 109967396 | 0.95 | 1.04 |
| chr14 | 107349540 | 141571530 | 1.32 | 1.12 |
| chr15 | 102531392 | 91994215 | 0.9 | 1.09 |
| chr16 | 90354753 | 99294935 | 1.1 | 4.88 |
| chr17 | 81195210 | 94323935 | 1.16 | 1.28 |
| chr18 | 78077248 | 52078289 | 0.67 | 1.25 |
| chr19 | 59128983 | 101096121 | 1.71 | 2.66 |
| chr20 | 63025520 | 103484085 | 1.64 | 1.14 |
| chr21 | 48129895 | 40289350 | 0.84 | 1.52 |
| chr22 | 51304566 | 42323225 | 0.82 | 0.57 |
| chrX | 155270560 | 166119874 | 1.07 | 2.62 |
| chrY | 59373566 | 4186982 | 0.07 | � |
| chrM | 16571 | 3893242 | 234.94 | 56.21 |
