Summary
Globals
Reference size | 3,095,693,983 |
Number of reads | 47,999,991 |
Mapped reads | 44,607,607 / 92.93% |
Unmapped reads | 3,392,384 / 7.07% |
Paired reads | 0 / 0% |
Read min/max/mean length | 94 / 94 / 94 |
Clipped reads | 311 / 0% |
Duplication rate | 43.63% |
ACGT Content
Number/percentage of A's | 1,089,966,145 / 26% |
Number/percentage of C's | 1,005,276,444 / 23.98% |
Number/percentage of T's | 1,091,710,214 / 26.04% |
Number/percentage of G's | 1,005,930,204 / 23.99% |
Number/percentage of N's | 0 / 0% |
GC Percentage | 47.97% |
Coverage
Mean | 1.35 |
Standard Deviation | 4.51 |
Mapping Quality
Mean Mapping Quality | 32.5 |
Indels
Total reads with indels | 758,719 |
Insertions | 186,314 |
Deletions | 572,405 |
Homopolymer indels | 70.3% |
Chromosome stats
Name | Length | Mapped bases | Mean coverage | Standard deviation |
chr1 | 249250621 | 424270848 | 1.7 | 9.01 |
chr2 | 243199373 | 310874220 | 1.28 | 2.32 |
chr3 | 198022430 | 233649744 | 1.18 | 1.9 |
chr4 | 191154276 | 186964426 | 0.98 | 1.74 |
chr5 | 180915260 | 213164419 | 1.18 | 1.9 |
chr6 | 171115067 | 223102662 | 1.3 | 3.51 |
chr7 | 159138663 | 211586716 | 1.33 | 11.67 |
chr8 | 146364022 | 182912911 | 1.25 | 2.54 |
chr9 | 141213431 | 167677193 | 1.19 | 1.89 |
chr10 | 135534747 | 190536116 | 1.41 | 5 |
chr11 | 135006516 | 187896597 | 1.39 | 2.25 |
chr12 | 133851895 | 178621512 | 1.33 | 2.05 |
chr13 | 115169878 | 111706916 | 0.97 | 1.75 |
chr14 | 107349540 | 177962360 | 1.66 | 2.5 |
chr15 | 102531392 | 126253161 | 1.23 | 1.87 |
chr16 | 90354753 | 157819226 | 1.75 | 2.82 |
chr17 | 81195210 | 163730783 | 2.02 | 2.63 |
chr18 | 78077248 | 60310026 | 0.77 | 2.1 |
chr19 | 59128983 | 194925872 | 3.3 | 4.14 |
chr20 | 63025520 | 158316323 | 2.51 | 2.95 |
chr21 | 48129895 | 49669624 | 1.03 | 2.63 |
chr22 | 51304566 | 81002329 | 1.58 | 2.35 |
chrX | 155270560 | 193556823 | 1.25 | 3.8 |
chrY | 59373566 | 5324583 | 0.09 | � |
chrM | 16571 | 1709378 | 103.15 | 40.46 |