Summary
Globals
Reference size | 3,095,693,983 |
Number of reads | 34,969,510 |
Mapped reads | 30,835,875 / 88.18% |
Unmapped reads | 4,133,635 / 11.82% |
Paired reads | 0 / 0% |
Read min/max/mean length | 100 / 100 / 100 |
Clipped reads | 132 / 0% |
Duplication rate | 5.08% |
ACGT Content
Number/percentage of A's | 881,738,902 / 28.6% |
Number/percentage of C's | 658,751,935 / 21.37% |
Number/percentage of T's | 883,418,349 / 28.65% |
Number/percentage of G's | 659,374,057 / 21.39% |
Number/percentage of N's | 0 / 0% |
GC Percentage | 42.75% |
Coverage
Mean | 1 |
Standard Deviation | 4.67 |
Mapping Quality
Mean Mapping Quality | 32.52 |
Indels
Total reads with indels | 597,463 |
Insertions | 143,987 |
Deletions | 453,476 |
Homopolymer indels | 70.32% |
Chromosome stats
Name | Length | Mapped bases | Mean coverage | Standard deviation |
chr1 | 249250621 | 296728865 | 1.19 | 9.36 |
chr2 | 243199373 | 238814514 | 0.98 | 1.43 |
chr3 | 198022430 | 189590021 | 0.96 | 2.02 |
chr4 | 191154276 | 172849040 | 0.9 | 1.09 |
chr5 | 180915260 | 172660487 | 0.95 | 1.04 |
chr6 | 171115067 | 177566767 | 1.04 | 2.81 |
chr7 | 159138663 | 157717428 | 0.99 | 11.53 |
chr8 | 146364022 | 150490153 | 1.03 | 1.72 |
chr9 | 141213431 | 121182874 | 0.86 | 0.51 |
chr10 | 135534747 | 136951744 | 1.01 | 10.53 |
chr11 | 135006516 | 134331123 | 0.99 | 1 |
chr12 | 133851895 | 131964484 | 0.99 | 1.01 |
chr13 | 115169878 | 103204319 | 0.9 | 1.09 |
chr14 | 107349540 | 133588287 | 1.24 | 1.2 |
chr15 | 102531392 | 86886505 | 0.85 | 0.53 |
chr16 | 90354753 | 96529923 | 1.07 | 4.78 |
chr17 | 81195210 | 89942272 | 1.11 | 1.33 |
chr18 | 78077248 | 47774370 | 0.61 | 0.79 |
chr19 | 59128983 | 97667434 | 1.65 | 2.3 |
chr20 | 63025520 | 98645675 | 1.57 | 1.25 |
chr21 | 48129895 | 37545410 | 0.78 | 1.18 |
chr22 | 51304566 | 41192481 | 0.8 | 0.6 |
chrX | 155270560 | 165986672 | 1.07 | 2.42 |
chrY | 59373566 | 3330641 | 0.06 | � |
chrM | 16571 | 784684 | 47.35 | 12.99 |