Summary
Globals
Reference size | 3,095,693,983 |
Number of reads | 34,465,859 |
Mapped reads | 31,250,375 / 90.67% |
Unmapped reads | 3,215,484 / 9.33% |
Paired reads | 0 / 0% |
Read min/max/mean length | 90 / 90 / 90 |
Clipped reads | 131 / 0% |
Duplication rate | 8.64% |
ACGT Content
Number/percentage of A's | 828,060,825 / 29.44% |
Number/percentage of C's | 577,283,114 / 20.53% |
Number/percentage of T's | 829,166,676 / 29.48% |
Number/percentage of G's | 577,876,415 / 20.55% |
Number/percentage of N's | 0 / 0% |
GC Percentage | 41.07% |
Coverage
Mean | 0.91 |
Standard Deviation | 5.54 |
Mapping Quality
Mean Mapping Quality | 32.35 |
Indels
Total reads with indels | 451,664 |
Insertions | 125,774 |
Deletions | 325,890 |
Homopolymer indels | 74.78% |
Chromosome stats
Name | Length | Mapped bases | Mean coverage | Standard deviation |
chr1 | 249250621 | 267371851 | 1.07 | 10.81 |
chr2 | 243199373 | 224156777 | 0.92 | 1.77 |
chr3 | 198022430 | 178658844 | 0.9 | 3.19 |
chr4 | 191154276 | 170902948 | 0.89 | 1.1 |
chr5 | 180915260 | 163975978 | 0.91 | 1.09 |
chr6 | 171115067 | 169039790 | 0.99 | 2.83 |
chr7 | 159138663 | 145919945 | 0.92 | 11.41 |
chr8 | 146364022 | 131182763 | 0.9 | 1.79 |
chr9 | 141213431 | 110232206 | 0.78 | 0.63 |
chr10 | 135534747 | 129768841 | 0.96 | 15.56 |
chr11 | 135006516 | 121280238 | 0.9 | 1.09 |
chr12 | 133851895 | 119699886 | 0.89 | 0.45 |
chr13 | 115169878 | 114679968 | 1 | 1 |
chr14 | 107349540 | 118134787 | 1.1 | 0.89 |
chr15 | 102531392 | 75443662 | 0.74 | 0.68 |
chr16 | 90354753 | 81621445 | 0.9 | 5.93 |
chr17 | 81195210 | 74284002 | 0.91 | 1.08 |
chr18 | 78077248 | 43724259 | 0.56 | 1.3 |
chr19 | 59128983 | 74770066 | 1.26 | 3.52 |
chr20 | 63025520 | 82373466 | 1.31 | 1.14 |
chr21 | 48129895 | 32639187 | 0.68 | 1.24 |
chr22 | 51304566 | 31764830 | 0.62 | 0.79 |
chrX | 155270560 | 145717188 | 0.94 | 2.26 |
chrY | 59373566 | 3318989 | 0.06 | � |
chrM | 16571 | 2092795 | 126.29 | 35 |