Summary
Globals
Reference size | 3,095,693,983 |
Number of reads | 41,799,267 |
Mapped reads | 38,063,509 / 91.06% |
Unmapped reads | 3,735,758 / 8.94% |
Paired reads | 0 / 0% |
Read min/max/mean length | 94 / 94 / 94 |
Clipped reads | 209 / 0% |
Duplication rate | 51.55% |
ACGT Content
Number/percentage of A's | 924,307,470 / 25.83% |
Number/percentage of C's | 863,688,365 / 24.14% |
Number/percentage of T's | 926,022,467 / 25.88% |
Number/percentage of G's | 863,759,500 / 24.14% |
Number/percentage of N's | 0 / 0% |
GC Percentage | 48.28% |
Coverage
Mean | 1.16 |
Standard Deviation | 4.01 |
Mapping Quality
Mean Mapping Quality | 32.23 |
Indels
Total reads with indels | 641,104 |
Insertions | 153,820 |
Deletions | 487,284 |
Homopolymer indels | 69.5% |
Chromosome stats
Name | Length | Mapped bases | Mean coverage | Standard deviation |
chr1 | 249250621 | 354929502 | 1.42 | 8.18 |
chr2 | 243199373 | 262003350 | 1.08 | 2.2 |
chr3 | 198022430 | 195800733 | 0.99 | 1.74 |
chr4 | 191154276 | 161419218 | 0.84 | 2.3 |
chr5 | 180915260 | 180180062 | 1 | 2 |
chr6 | 171115067 | 189624411 | 1.11 | 3.13 |
chr7 | 159138663 | 181040541 | 1.14 | 9.47 |
chr8 | 146364022 | 154927023 | 1.06 | 2.42 |
chr9 | 141213431 | 142710585 | 1.01 | 1.99 |
chr10 | 135534747 | 162152654 | 1.2 | 3.09 |
chr11 | 135006516 | 160703137 | 1.19 | 2.14 |
chr12 | 133851895 | 153585045 | 1.15 | 2.16 |
chr13 | 115169878 | 98557469 | 0.86 | 1.81 |
chr14 | 107349540 | 153431655 | 1.43 | 2.44 |
chr15 | 102531392 | 108492427 | 1.06 | 1.97 |
chr16 | 90354753 | 133845407 | 1.48 | 2.61 |
chr17 | 81195210 | 139364443 | 1.72 | 2.66 |
chr18 | 78077248 | 55733018 | 0.71 | 3.08 |
chr19 | 59128983 | 167919167 | 2.84 | 3.86 |
chr20 | 63025520 | 137437759 | 2.18 | 2.87 |
chr21 | 48129895 | 45590817 | 0.95 | 3.48 |
chr22 | 51304566 | 69083949 | 1.35 | 2.28 |
chrX | 155270560 | 160623421 | 1.03 | 3.45 |
chrY | 59373566 | 7084700 | 0.12 | 0.99 |
chrM | 16571 | 2099153 | 126.68 | 52.61 |