Qualimap Report: Counts QC

Input data and parameters 

Samples

pGlcn03 pGlcn /data/qualimap_release_data/counts/GlcN_mice/mouse_counts_ensembl.txt
nGlcn01 nGlcn /data/qualimap_release_data/counts/GlcN_mice/mouse_counts_ensembl.txt
pGlcn01 pGlcn /data/qualimap_release_data/counts/GlcN_mice/mouse_counts_ensembl.txt
nGlcn03 nGlcn /data/qualimap_release_data/counts/GlcN_mice/mouse_counts_ensembl.txt
nGlcn02 nGlcn /data/qualimap_release_data/counts/GlcN_mice/mouse_counts_ensembl.txt
pGlcn02 pGlcn /data/qualimap_release_data/counts/GlcN_mice/mouse_counts_ensembl.txt

Options

Counts threshold: 5
Species info: /home/kokonech/qualimap-qualimap/cli/species/mouse.ens68.txt

Counts Density 

Scatterplot Matrix 

Saturation 

Counts Distribution 

Features With Low Counts 

Contents

  • Input data & parameters
  • Counts Density
  • Scatterplot Matrix
  • Saturation
  • Counts Distribution
  • Features With Low Counts
    • 2014/08/14 16:39:38
    Generated by QualiMap v.2.0-dev